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DESeq2 or edgeR
I was asked recently on Twitter about my thoughts on DESeq2 and edgeR and which tool is better. My reply was: @lpachter @gordatita_ @BioMickWatson @wolfgangkhuber perform similarly. I recommend people...
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Salmon vs kallisto on benchmarking datasets
As part of a presentation on bias modeling for RNA-seq, I put together a Shiny app that allows one to explore the differences between Salmon and kallisto on all samples from GEUVADIS and SEQC. For all...
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